Function reference • ecoocc

All functions

betadiversity_core(): Compute the beta diversity between all sites

cooccurrence_core() cooccurrence_triplet_core(): Co-occurrence analysis.

ec_as_pa(): Convert foreign object to a pa object

ec_betadiversity(): Compute beta diversity

ec_cooc() ec_cooc_pairwise() ec_cooc_species() ec_cooc_global(): Cooccurrence analysis

ec_cooc_count_pair() ec_cooc_count_triplet() ec_checkerboard(): Co-occurrence network

ec_generate_pa() ec_order_pa(): Generate random presence/absence matrix

ec_pa(): Create a presence/absence object Create a presence/absence (pa) object from a matrix.

ec_rarefaction(): Compute a rarefaction curve

ec_temporal_betadiversity(): Compute temporal betadiversity

ecoocc: ecoocc

print(<pa>): Print method for pa object

rarefaction_core: Compute rarefaction

temporal_beta_core(): Compute the beta diversity two set of sites