Cooccurrence analysis.
Usage
ec_cooc(x, ...)
# S3 method for pa
ec_cooc(x, ...)
# S3 method for cooc_count
ec_cooc(x, nsit, ...)
ec_cooc_pairwise(x, ...)
# S3 method for pa
ec_cooc_pairwise(x, ...)
# S3 method for cooc_count
ec_cooc_pairwise(x, nsit, ...)
ec_cooc_species(x, ...)
# S3 method for pa
ec_cooc_species(x, ...)
# S3 method for cooc_count
ec_cooc_species(x, nsit, ...)
ec_cooc_global(x, ...)
# S3 method for pa
ec_cooc_global(x, ...)
# S3 method for cooc_count
ec_cooc_global(x, nsit, ...)Functions
ec_cooc_pairwise(): Return a matrix of cooccurrence metrics for pair of species.ec_cooc_species(): Return a matrix of cooccurrence metrics for species.ec_cooc_global(): Return a matrix of cooccurrence metrics for species.
Examples
mat0 <- matrix(0, 10, 10)
mat1 <- matrix(1, 10, 10)
matU <- rbind(cbind(mat1, mat0), cbind(mat0, mat1))
ec_cooc(ec_as_pa(matU))
#> $cooc_count
#> species1 species2 case_10 case_01 case_11 case_00 case_spc1 case_spc2
#> 1 spc_01 spc_02 0 0 10 10 10 10
#> 2 spc_01 spc_03 0 0 10 10 10 10
#> 3 spc_01 spc_04 0 0 10 10 10 10
#> 4 spc_01 spc_05 0 0 10 10 10 10
#> 5 spc_01 spc_06 0 0 10 10 10 10
#> 6 spc_01 spc_07 0 0 10 10 10 10
#> 7 spc_01 spc_08 0 0 10 10 10 10
#> 8 spc_01 spc_09 0 0 10 10 10 10
#> 9 spc_01 spc_10 0 0 10 10 10 10
#> 10 spc_01 spc_11 10 10 0 0 10 10
#> 11 spc_01 spc_12 10 10 0 0 10 10
#> 12 spc_01 spc_13 10 10 0 0 10 10
#> 13 spc_01 spc_14 10 10 0 0 10 10
#> 14 spc_01 spc_15 10 10 0 0 10 10
#> 15 spc_01 spc_16 10 10 0 0 10 10
#> 16 spc_01 spc_17 10 10 0 0 10 10
#> 17 spc_01 spc_18 10 10 0 0 10 10
#> 18 spc_01 spc_19 10 10 0 0 10 10
#> 19 spc_01 spc_20 10 10 0 0 10 10
#> 20 spc_02 spc_03 0 0 10 10 10 10
#> 21 spc_02 spc_04 0 0 10 10 10 10
#> 22 spc_02 spc_05 0 0 10 10 10 10
#> 23 spc_02 spc_06 0 0 10 10 10 10
#> 24 spc_02 spc_07 0 0 10 10 10 10
#> 25 spc_02 spc_08 0 0 10 10 10 10
#> 26 spc_02 spc_09 0 0 10 10 10 10
#> 27 spc_02 spc_10 0 0 10 10 10 10
#> 28 spc_02 spc_11 10 10 0 0 10 10
#> 29 spc_02 spc_12 10 10 0 0 10 10
#> 30 spc_02 spc_13 10 10 0 0 10 10
#> 31 spc_02 spc_14 10 10 0 0 10 10
#> 32 spc_02 spc_15 10 10 0 0 10 10
#> 33 spc_02 spc_16 10 10 0 0 10 10
#> 34 spc_02 spc_17 10 10 0 0 10 10
#> 35 spc_02 spc_18 10 10 0 0 10 10
#> 36 spc_02 spc_19 10 10 0 0 10 10
#> 37 spc_02 spc_20 10 10 0 0 10 10
#> 38 spc_03 spc_04 0 0 10 10 10 10
#> 39 spc_03 spc_05 0 0 10 10 10 10
#> 40 spc_03 spc_06 0 0 10 10 10 10
#> 41 spc_03 spc_07 0 0 10 10 10 10
#> 42 spc_03 spc_08 0 0 10 10 10 10
#> 43 spc_03 spc_09 0 0 10 10 10 10
#> 44 spc_03 spc_10 0 0 10 10 10 10
#> 45 spc_03 spc_11 10 10 0 0 10 10
#> 46 spc_03 spc_12 10 10 0 0 10 10
#> 47 spc_03 spc_13 10 10 0 0 10 10
#> 48 spc_03 spc_14 10 10 0 0 10 10
#> 49 spc_03 spc_15 10 10 0 0 10 10
#> 50 spc_03 spc_16 10 10 0 0 10 10
#> 51 spc_03 spc_17 10 10 0 0 10 10
#> 52 spc_03 spc_18 10 10 0 0 10 10
#> 53 spc_03 spc_19 10 10 0 0 10 10
#> 54 spc_03 spc_20 10 10 0 0 10 10
#> 55 spc_04 spc_05 0 0 10 10 10 10
#> 56 spc_04 spc_06 0 0 10 10 10 10
#> 57 spc_04 spc_07 0 0 10 10 10 10
#> 58 spc_04 spc_08 0 0 10 10 10 10
#> 59 spc_04 spc_09 0 0 10 10 10 10
#> 60 spc_04 spc_10 0 0 10 10 10 10
#> 61 spc_04 spc_11 10 10 0 0 10 10
#> 62 spc_04 spc_12 10 10 0 0 10 10
#> 63 spc_04 spc_13 10 10 0 0 10 10
#> 64 spc_04 spc_14 10 10 0 0 10 10
#> 65 spc_04 spc_15 10 10 0 0 10 10
#> 66 spc_04 spc_16 10 10 0 0 10 10
#> 67 spc_04 spc_17 10 10 0 0 10 10
#> 68 spc_04 spc_18 10 10 0 0 10 10
#> 69 spc_04 spc_19 10 10 0 0 10 10
#> 70 spc_04 spc_20 10 10 0 0 10 10
#> 71 spc_05 spc_06 0 0 10 10 10 10
#> 72 spc_05 spc_07 0 0 10 10 10 10
#> 73 spc_05 spc_08 0 0 10 10 10 10
#> 74 spc_05 spc_09 0 0 10 10 10 10
#> 75 spc_05 spc_10 0 0 10 10 10 10
#> 76 spc_05 spc_11 10 10 0 0 10 10
#> 77 spc_05 spc_12 10 10 0 0 10 10
#> 78 spc_05 spc_13 10 10 0 0 10 10
#> 79 spc_05 spc_14 10 10 0 0 10 10
#> 80 spc_05 spc_15 10 10 0 0 10 10
#> 81 spc_05 spc_16 10 10 0 0 10 10
#> 82 spc_05 spc_17 10 10 0 0 10 10
#> 83 spc_05 spc_18 10 10 0 0 10 10
#> 84 spc_05 spc_19 10 10 0 0 10 10
#> 85 spc_05 spc_20 10 10 0 0 10 10
#> 86 spc_06 spc_07 0 0 10 10 10 10
#> 87 spc_06 spc_08 0 0 10 10 10 10
#> 88 spc_06 spc_09 0 0 10 10 10 10
#> 89 spc_06 spc_10 0 0 10 10 10 10
#> 90 spc_06 spc_11 10 10 0 0 10 10
#> 91 spc_06 spc_12 10 10 0 0 10 10
#> 92 spc_06 spc_13 10 10 0 0 10 10
#> 93 spc_06 spc_14 10 10 0 0 10 10
#> 94 spc_06 spc_15 10 10 0 0 10 10
#> 95 spc_06 spc_16 10 10 0 0 10 10
#> 96 spc_06 spc_17 10 10 0 0 10 10
#> 97 spc_06 spc_18 10 10 0 0 10 10
#> 98 spc_06 spc_19 10 10 0 0 10 10
#> 99 spc_06 spc_20 10 10 0 0 10 10
#> 100 spc_07 spc_08 0 0 10 10 10 10
#> 101 spc_07 spc_09 0 0 10 10 10 10
#> 102 spc_07 spc_10 0 0 10 10 10 10
#> 103 spc_07 spc_11 10 10 0 0 10 10
#> 104 spc_07 spc_12 10 10 0 0 10 10
#> 105 spc_07 spc_13 10 10 0 0 10 10
#> 106 spc_07 spc_14 10 10 0 0 10 10
#> 107 spc_07 spc_15 10 10 0 0 10 10
#> 108 spc_07 spc_16 10 10 0 0 10 10
#> 109 spc_07 spc_17 10 10 0 0 10 10
#> 110 spc_07 spc_18 10 10 0 0 10 10
#> 111 spc_07 spc_19 10 10 0 0 10 10
#> 112 spc_07 spc_20 10 10 0 0 10 10
#> 113 spc_08 spc_09 0 0 10 10 10 10
#> 114 spc_08 spc_10 0 0 10 10 10 10
#> 115 spc_08 spc_11 10 10 0 0 10 10
#> 116 spc_08 spc_12 10 10 0 0 10 10
#> 117 spc_08 spc_13 10 10 0 0 10 10
#> 118 spc_08 spc_14 10 10 0 0 10 10
#> 119 spc_08 spc_15 10 10 0 0 10 10
#> 120 spc_08 spc_16 10 10 0 0 10 10
#> 121 spc_08 spc_17 10 10 0 0 10 10
#> 122 spc_08 spc_18 10 10 0 0 10 10
#> 123 spc_08 spc_19 10 10 0 0 10 10
#> 124 spc_08 spc_20 10 10 0 0 10 10
#> 125 spc_09 spc_10 0 0 10 10 10 10
#> 126 spc_09 spc_11 10 10 0 0 10 10
#> 127 spc_09 spc_12 10 10 0 0 10 10
#> 128 spc_09 spc_13 10 10 0 0 10 10
#> 129 spc_09 spc_14 10 10 0 0 10 10
#> 130 spc_09 spc_15 10 10 0 0 10 10
#> 131 spc_09 spc_16 10 10 0 0 10 10
#> 132 spc_09 spc_17 10 10 0 0 10 10
#> 133 spc_09 spc_18 10 10 0 0 10 10
#> 134 spc_09 spc_19 10 10 0 0 10 10
#> 135 spc_09 spc_20 10 10 0 0 10 10
#> 136 spc_10 spc_11 10 10 0 0 10 10
#> 137 spc_10 spc_12 10 10 0 0 10 10
#> 138 spc_10 spc_13 10 10 0 0 10 10
#> 139 spc_10 spc_14 10 10 0 0 10 10
#> 140 spc_10 spc_15 10 10 0 0 10 10
#> 141 spc_10 spc_16 10 10 0 0 10 10
#> 142 spc_10 spc_17 10 10 0 0 10 10
#> 143 spc_10 spc_18 10 10 0 0 10 10
#> 144 spc_10 spc_19 10 10 0 0 10 10
#> 145 spc_10 spc_20 10 10 0 0 10 10
#> 146 spc_11 spc_12 0 0 10 10 10 10
#> 147 spc_11 spc_13 0 0 10 10 10 10
#> 148 spc_11 spc_14 0 0 10 10 10 10
#> 149 spc_11 spc_15 0 0 10 10 10 10
#> 150 spc_11 spc_16 0 0 10 10 10 10
#> 151 spc_11 spc_17 0 0 10 10 10 10
#> 152 spc_11 spc_18 0 0 10 10 10 10
#> 153 spc_11 spc_19 0 0 10 10 10 10
#> 154 spc_11 spc_20 0 0 10 10 10 10
#> 155 spc_12 spc_13 0 0 10 10 10 10
#> 156 spc_12 spc_14 0 0 10 10 10 10
#> 157 spc_12 spc_15 0 0 10 10 10 10
#> 158 spc_12 spc_16 0 0 10 10 10 10
#> 159 spc_12 spc_17 0 0 10 10 10 10
#> 160 spc_12 spc_18 0 0 10 10 10 10
#> 161 spc_12 spc_19 0 0 10 10 10 10
#> 162 spc_12 spc_20 0 0 10 10 10 10
#> 163 spc_13 spc_14 0 0 10 10 10 10
#> 164 spc_13 spc_15 0 0 10 10 10 10
#> 165 spc_13 spc_16 0 0 10 10 10 10
#> 166 spc_13 spc_17 0 0 10 10 10 10
#> 167 spc_13 spc_18 0 0 10 10 10 10
#> 168 spc_13 spc_19 0 0 10 10 10 10
#> 169 spc_13 spc_20 0 0 10 10 10 10
#> 170 spc_14 spc_15 0 0 10 10 10 10
#> 171 spc_14 spc_16 0 0 10 10 10 10
#> 172 spc_14 spc_17 0 0 10 10 10 10
#> 173 spc_14 spc_18 0 0 10 10 10 10
#> 174 spc_14 spc_19 0 0 10 10 10 10
#> 175 spc_14 spc_20 0 0 10 10 10 10
#> 176 spc_15 spc_16 0 0 10 10 10 10
#> 177 spc_15 spc_17 0 0 10 10 10 10
#> 178 spc_15 spc_18 0 0 10 10 10 10
#> 179 spc_15 spc_19 0 0 10 10 10 10
#> 180 spc_15 spc_20 0 0 10 10 10 10
#> 181 spc_16 spc_17 0 0 10 10 10 10
#> 182 spc_16 spc_18 0 0 10 10 10 10
#> 183 spc_16 spc_19 0 0 10 10 10 10
#> 184 spc_16 spc_20 0 0 10 10 10 10
#> 185 spc_17 spc_18 0 0 10 10 10 10
#> 186 spc_17 spc_19 0 0 10 10 10 10
#> 187 spc_17 spc_20 0 0 10 10 10 10
#> 188 spc_18 spc_19 0 0 10 10 10 10
#> 189 spc_18 spc_20 0 0 10 10 10 10
#> 190 spc_19 spc_20 0 0 10 10 10 10
#>
#> $pairwise
#> species1 species2 zs_bi zs_hy binary_covariance mean_pairwise_index
#> 1 spc_01 spc_02 2.581989 4.358899 0.2631579 Inf
#> 2 spc_01 spc_03 2.581989 4.358899 0.2631579 Inf
#> 3 spc_01 spc_04 2.581989 4.358899 0.2631579 Inf
#> 4 spc_01 spc_05 2.581989 4.358899 0.2631579 Inf
#> 5 spc_01 spc_06 2.581989 4.358899 0.2631579 Inf
#> 6 spc_01 spc_07 2.581989 4.358899 0.2631579 Inf
#> 7 spc_01 spc_08 2.581989 4.358899 0.2631579 Inf
#> 8 spc_01 spc_09 2.581989 4.358899 0.2631579 Inf
#> 9 spc_01 spc_10 2.581989 4.358899 0.2631579 Inf
#> 10 spc_01 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 11 spc_01 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 12 spc_01 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 13 spc_01 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 14 spc_01 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 15 spc_01 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 16 spc_01 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 17 spc_01 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 18 spc_01 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 19 spc_01 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 20 spc_02 spc_03 2.581989 4.358899 0.2631579 Inf
#> 21 spc_02 spc_04 2.581989 4.358899 0.2631579 Inf
#> 22 spc_02 spc_05 2.581989 4.358899 0.2631579 Inf
#> 23 spc_02 spc_06 2.581989 4.358899 0.2631579 Inf
#> 24 spc_02 spc_07 2.581989 4.358899 0.2631579 Inf
#> 25 spc_02 spc_08 2.581989 4.358899 0.2631579 Inf
#> 26 spc_02 spc_09 2.581989 4.358899 0.2631579 Inf
#> 27 spc_02 spc_10 2.581989 4.358899 0.2631579 Inf
#> 28 spc_02 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 29 spc_02 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 30 spc_02 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 31 spc_02 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 32 spc_02 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 33 spc_02 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 34 spc_02 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 35 spc_02 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 36 spc_02 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 37 spc_02 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 38 spc_03 spc_04 2.581989 4.358899 0.2631579 Inf
#> 39 spc_03 spc_05 2.581989 4.358899 0.2631579 Inf
#> 40 spc_03 spc_06 2.581989 4.358899 0.2631579 Inf
#> 41 spc_03 spc_07 2.581989 4.358899 0.2631579 Inf
#> 42 spc_03 spc_08 2.581989 4.358899 0.2631579 Inf
#> 43 spc_03 spc_09 2.581989 4.358899 0.2631579 Inf
#> 44 spc_03 spc_10 2.581989 4.358899 0.2631579 Inf
#> 45 spc_03 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 46 spc_03 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 47 spc_03 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 48 spc_03 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 49 spc_03 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 50 spc_03 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 51 spc_03 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 52 spc_03 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 53 spc_03 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 54 spc_03 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 55 spc_04 spc_05 2.581989 4.358899 0.2631579 Inf
#> 56 spc_04 spc_06 2.581989 4.358899 0.2631579 Inf
#> 57 spc_04 spc_07 2.581989 4.358899 0.2631579 Inf
#> 58 spc_04 spc_08 2.581989 4.358899 0.2631579 Inf
#> 59 spc_04 spc_09 2.581989 4.358899 0.2631579 Inf
#> 60 spc_04 spc_10 2.581989 4.358899 0.2631579 Inf
#> 61 spc_04 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 62 spc_04 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 63 spc_04 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 64 spc_04 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 65 spc_04 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 66 spc_04 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 67 spc_04 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 68 spc_04 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 69 spc_04 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 70 spc_04 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 71 spc_05 spc_06 2.581989 4.358899 0.2631579 Inf
#> 72 spc_05 spc_07 2.581989 4.358899 0.2631579 Inf
#> 73 spc_05 spc_08 2.581989 4.358899 0.2631579 Inf
#> 74 spc_05 spc_09 2.581989 4.358899 0.2631579 Inf
#> 75 spc_05 spc_10 2.581989 4.358899 0.2631579 Inf
#> 76 spc_05 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 77 spc_05 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 78 spc_05 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 79 spc_05 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 80 spc_05 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 81 spc_05 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 82 spc_05 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 83 spc_05 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 84 spc_05 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 85 spc_05 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 86 spc_06 spc_07 2.581989 4.358899 0.2631579 Inf
#> 87 spc_06 spc_08 2.581989 4.358899 0.2631579 Inf
#> 88 spc_06 spc_09 2.581989 4.358899 0.2631579 Inf
#> 89 spc_06 spc_10 2.581989 4.358899 0.2631579 Inf
#> 90 spc_06 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 91 spc_06 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 92 spc_06 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 93 spc_06 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 94 spc_06 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 95 spc_06 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 96 spc_06 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 97 spc_06 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 98 spc_06 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 99 spc_06 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 100 spc_07 spc_08 2.581989 4.358899 0.2631579 Inf
#> 101 spc_07 spc_09 2.581989 4.358899 0.2631579 Inf
#> 102 spc_07 spc_10 2.581989 4.358899 0.2631579 Inf
#> 103 spc_07 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 104 spc_07 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 105 spc_07 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 106 spc_07 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 107 spc_07 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 108 spc_07 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 109 spc_07 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 110 spc_07 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 111 spc_07 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 112 spc_07 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 113 spc_08 spc_09 2.581989 4.358899 0.2631579 Inf
#> 114 spc_08 spc_10 2.581989 4.358899 0.2631579 Inf
#> 115 spc_08 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 116 spc_08 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 117 spc_08 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 118 spc_08 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 119 spc_08 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 120 spc_08 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 121 spc_08 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 122 spc_08 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 123 spc_08 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 124 spc_08 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 125 spc_09 spc_10 2.581989 4.358899 0.2631579 Inf
#> 126 spc_09 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 127 spc_09 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 128 spc_09 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 129 spc_09 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 130 spc_09 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 131 spc_09 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 132 spc_09 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 133 spc_09 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 134 spc_09 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 135 spc_09 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 136 spc_10 spc_11 -2.581989 -4.358899 -0.2631579 0
#> 137 spc_10 spc_12 -2.581989 -4.358899 -0.2631579 0
#> 138 spc_10 spc_13 -2.581989 -4.358899 -0.2631579 0
#> 139 spc_10 spc_14 -2.581989 -4.358899 -0.2631579 0
#> 140 spc_10 spc_15 -2.581989 -4.358899 -0.2631579 0
#> 141 spc_10 spc_16 -2.581989 -4.358899 -0.2631579 0
#> 142 spc_10 spc_17 -2.581989 -4.358899 -0.2631579 0
#> 143 spc_10 spc_18 -2.581989 -4.358899 -0.2631579 0
#> 144 spc_10 spc_19 -2.581989 -4.358899 -0.2631579 0
#> 145 spc_10 spc_20 -2.581989 -4.358899 -0.2631579 0
#> 146 spc_11 spc_12 2.581989 4.358899 0.2631579 Inf
#> 147 spc_11 spc_13 2.581989 4.358899 0.2631579 Inf
#> 148 spc_11 spc_14 2.581989 4.358899 0.2631579 Inf
#> 149 spc_11 spc_15 2.581989 4.358899 0.2631579 Inf
#> 150 spc_11 spc_16 2.581989 4.358899 0.2631579 Inf
#> 151 spc_11 spc_17 2.581989 4.358899 0.2631579 Inf
#> 152 spc_11 spc_18 2.581989 4.358899 0.2631579 Inf
#> 153 spc_11 spc_19 2.581989 4.358899 0.2631579 Inf
#> 154 spc_11 spc_20 2.581989 4.358899 0.2631579 Inf
#> 155 spc_12 spc_13 2.581989 4.358899 0.2631579 Inf
#> 156 spc_12 spc_14 2.581989 4.358899 0.2631579 Inf
#> 157 spc_12 spc_15 2.581989 4.358899 0.2631579 Inf
#> 158 spc_12 spc_16 2.581989 4.358899 0.2631579 Inf
#> 159 spc_12 spc_17 2.581989 4.358899 0.2631579 Inf
#> 160 spc_12 spc_18 2.581989 4.358899 0.2631579 Inf
#> 161 spc_12 spc_19 2.581989 4.358899 0.2631579 Inf
#> 162 spc_12 spc_20 2.581989 4.358899 0.2631579 Inf
#> 163 spc_13 spc_14 2.581989 4.358899 0.2631579 Inf
#> 164 spc_13 spc_15 2.581989 4.358899 0.2631579 Inf
#> 165 spc_13 spc_16 2.581989 4.358899 0.2631579 Inf
#> 166 spc_13 spc_17 2.581989 4.358899 0.2631579 Inf
#> 167 spc_13 spc_18 2.581989 4.358899 0.2631579 Inf
#> 168 spc_13 spc_19 2.581989 4.358899 0.2631579 Inf
#> 169 spc_13 spc_20 2.581989 4.358899 0.2631579 Inf
#> 170 spc_14 spc_15 2.581989 4.358899 0.2631579 Inf
#> 171 spc_14 spc_16 2.581989 4.358899 0.2631579 Inf
#> 172 spc_14 spc_17 2.581989 4.358899 0.2631579 Inf
#> 173 spc_14 spc_18 2.581989 4.358899 0.2631579 Inf
#> 174 spc_14 spc_19 2.581989 4.358899 0.2631579 Inf
#> 175 spc_14 spc_20 2.581989 4.358899 0.2631579 Inf
#> 176 spc_15 spc_16 2.581989 4.358899 0.2631579 Inf
#> 177 spc_15 spc_17 2.581989 4.358899 0.2631579 Inf
#> 178 spc_15 spc_18 2.581989 4.358899 0.2631579 Inf
#> 179 spc_15 spc_19 2.581989 4.358899 0.2631579 Inf
#> 180 spc_15 spc_20 2.581989 4.358899 0.2631579 Inf
#> 181 spc_16 spc_17 2.581989 4.358899 0.2631579 Inf
#> 182 spc_16 spc_18 2.581989 4.358899 0.2631579 Inf
#> 183 spc_16 spc_19 2.581989 4.358899 0.2631579 Inf
#> 184 spc_16 spc_20 2.581989 4.358899 0.2631579 Inf
#> 185 spc_17 spc_18 2.581989 4.358899 0.2631579 Inf
#> 186 spc_17 spc_19 2.581989 4.358899 0.2631579 Inf
#> 187 spc_17 spc_20 2.581989 4.358899 0.2631579 Inf
#> 188 spc_18 spc_19 2.581989 4.358899 0.2631579 Inf
#> 189 spc_18 spc_20 2.581989 4.358899 0.2631579 Inf
#> 190 spc_19 spc_20 2.581989 4.358899 0.2631579 Inf
#> mutual_information c_score_unit overlap_1_2 overlap_2_1 symmetry
#> 1 0.0025 0 1 1 0
#> 2 0.0025 0 1 1 0
#> 3 0.0025 0 1 1 0
#> 4 0.0025 0 1 1 0
#> 5 0.0025 0 1 1 0
#> 6 0.0025 0 1 1 0
#> 7 0.0025 0 1 1 0
#> 8 0.0025 0 1 1 0
#> 9 0.0025 0 1 1 0
#> 10 0.0025 100 0 0 NaN
#> 11 0.0025 100 0 0 NaN
#> 12 0.0025 100 0 0 NaN
#> 13 0.0025 100 0 0 NaN
#> 14 0.0025 100 0 0 NaN
#> 15 0.0025 100 0 0 NaN
#> 16 0.0025 100 0 0 NaN
#> 17 0.0025 100 0 0 NaN
#> 18 0.0025 100 0 0 NaN
#> 19 0.0025 100 0 0 NaN
#> 20 0.0025 0 1 1 0
#> 21 0.0025 0 1 1 0
#> 22 0.0025 0 1 1 0
#> 23 0.0025 0 1 1 0
#> 24 0.0025 0 1 1 0
#> 25 0.0025 0 1 1 0
#> 26 0.0025 0 1 1 0
#> 27 0.0025 0 1 1 0
#> 28 0.0025 100 0 0 NaN
#> 29 0.0025 100 0 0 NaN
#> 30 0.0025 100 0 0 NaN
#> 31 0.0025 100 0 0 NaN
#> 32 0.0025 100 0 0 NaN
#> 33 0.0025 100 0 0 NaN
#> 34 0.0025 100 0 0 NaN
#> 35 0.0025 100 0 0 NaN
#> 36 0.0025 100 0 0 NaN
#> 37 0.0025 100 0 0 NaN
#> 38 0.0025 0 1 1 0
#> 39 0.0025 0 1 1 0
#> 40 0.0025 0 1 1 0
#> 41 0.0025 0 1 1 0
#> 42 0.0025 0 1 1 0
#> 43 0.0025 0 1 1 0
#> 44 0.0025 0 1 1 0
#> 45 0.0025 100 0 0 NaN
#> 46 0.0025 100 0 0 NaN
#> 47 0.0025 100 0 0 NaN
#> 48 0.0025 100 0 0 NaN
#> 49 0.0025 100 0 0 NaN
#> 50 0.0025 100 0 0 NaN
#> 51 0.0025 100 0 0 NaN
#> 52 0.0025 100 0 0 NaN
#> 53 0.0025 100 0 0 NaN
#> 54 0.0025 100 0 0 NaN
#> 55 0.0025 0 1 1 0
#> 56 0.0025 0 1 1 0
#> 57 0.0025 0 1 1 0
#> 58 0.0025 0 1 1 0
#> 59 0.0025 0 1 1 0
#> 60 0.0025 0 1 1 0
#> 61 0.0025 100 0 0 NaN
#> 62 0.0025 100 0 0 NaN
#> 63 0.0025 100 0 0 NaN
#> 64 0.0025 100 0 0 NaN
#> 65 0.0025 100 0 0 NaN
#> 66 0.0025 100 0 0 NaN
#> 67 0.0025 100 0 0 NaN
#> 68 0.0025 100 0 0 NaN
#> 69 0.0025 100 0 0 NaN
#> 70 0.0025 100 0 0 NaN
#> 71 0.0025 0 1 1 0
#> 72 0.0025 0 1 1 0
#> 73 0.0025 0 1 1 0
#> 74 0.0025 0 1 1 0
#> 75 0.0025 0 1 1 0
#> 76 0.0025 100 0 0 NaN
#> 77 0.0025 100 0 0 NaN
#> 78 0.0025 100 0 0 NaN
#> 79 0.0025 100 0 0 NaN
#> 80 0.0025 100 0 0 NaN
#> 81 0.0025 100 0 0 NaN
#> 82 0.0025 100 0 0 NaN
#> 83 0.0025 100 0 0 NaN
#> 84 0.0025 100 0 0 NaN
#> 85 0.0025 100 0 0 NaN
#> 86 0.0025 0 1 1 0
#> 87 0.0025 0 1 1 0
#> 88 0.0025 0 1 1 0
#> 89 0.0025 0 1 1 0
#> 90 0.0025 100 0 0 NaN
#> 91 0.0025 100 0 0 NaN
#> 92 0.0025 100 0 0 NaN
#> 93 0.0025 100 0 0 NaN
#> 94 0.0025 100 0 0 NaN
#> 95 0.0025 100 0 0 NaN
#> 96 0.0025 100 0 0 NaN
#> 97 0.0025 100 0 0 NaN
#> 98 0.0025 100 0 0 NaN
#> 99 0.0025 100 0 0 NaN
#> 100 0.0025 0 1 1 0
#> 101 0.0025 0 1 1 0
#> 102 0.0025 0 1 1 0
#> 103 0.0025 100 0 0 NaN
#> 104 0.0025 100 0 0 NaN
#> 105 0.0025 100 0 0 NaN
#> 106 0.0025 100 0 0 NaN
#> 107 0.0025 100 0 0 NaN
#> 108 0.0025 100 0 0 NaN
#> 109 0.0025 100 0 0 NaN
#> 110 0.0025 100 0 0 NaN
#> 111 0.0025 100 0 0 NaN
#> 112 0.0025 100 0 0 NaN
#> 113 0.0025 0 1 1 0
#> 114 0.0025 0 1 1 0
#> 115 0.0025 100 0 0 NaN
#> 116 0.0025 100 0 0 NaN
#> 117 0.0025 100 0 0 NaN
#> 118 0.0025 100 0 0 NaN
#> 119 0.0025 100 0 0 NaN
#> 120 0.0025 100 0 0 NaN
#> 121 0.0025 100 0 0 NaN
#> 122 0.0025 100 0 0 NaN
#> 123 0.0025 100 0 0 NaN
#> 124 0.0025 100 0 0 NaN
#> 125 0.0025 0 1 1 0
#> 126 0.0025 100 0 0 NaN
#> 127 0.0025 100 0 0 NaN
#> 128 0.0025 100 0 0 NaN
#> 129 0.0025 100 0 0 NaN
#> 130 0.0025 100 0 0 NaN
#> 131 0.0025 100 0 0 NaN
#> 132 0.0025 100 0 0 NaN
#> 133 0.0025 100 0 0 NaN
#> 134 0.0025 100 0 0 NaN
#> 135 0.0025 100 0 0 NaN
#> 136 0.0025 100 0 0 NaN
#> 137 0.0025 100 0 0 NaN
#> 138 0.0025 100 0 0 NaN
#> 139 0.0025 100 0 0 NaN
#> 140 0.0025 100 0 0 NaN
#> 141 0.0025 100 0 0 NaN
#> 142 0.0025 100 0 0 NaN
#> 143 0.0025 100 0 0 NaN
#> 144 0.0025 100 0 0 NaN
#> 145 0.0025 100 0 0 NaN
#> 146 0.0025 0 1 1 0
#> 147 0.0025 0 1 1 0
#> 148 0.0025 0 1 1 0
#> 149 0.0025 0 1 1 0
#> 150 0.0025 0 1 1 0
#> 151 0.0025 0 1 1 0
#> 152 0.0025 0 1 1 0
#> 153 0.0025 0 1 1 0
#> 154 0.0025 0 1 1 0
#> 155 0.0025 0 1 1 0
#> 156 0.0025 0 1 1 0
#> 157 0.0025 0 1 1 0
#> 158 0.0025 0 1 1 0
#> 159 0.0025 0 1 1 0
#> 160 0.0025 0 1 1 0
#> 161 0.0025 0 1 1 0
#> 162 0.0025 0 1 1 0
#> 163 0.0025 0 1 1 0
#> 164 0.0025 0 1 1 0
#> 165 0.0025 0 1 1 0
#> 166 0.0025 0 1 1 0
#> 167 0.0025 0 1 1 0
#> 168 0.0025 0 1 1 0
#> 169 0.0025 0 1 1 0
#> 170 0.0025 0 1 1 0
#> 171 0.0025 0 1 1 0
#> 172 0.0025 0 1 1 0
#> 173 0.0025 0 1 1 0
#> 174 0.0025 0 1 1 0
#> 175 0.0025 0 1 1 0
#> 176 0.0025 0 1 1 0
#> 177 0.0025 0 1 1 0
#> 178 0.0025 0 1 1 0
#> 179 0.0025 0 1 1 0
#> 180 0.0025 0 1 1 0
#> 181 0.0025 0 1 1 0
#> 182 0.0025 0 1 1 0
#> 183 0.0025 0 1 1 0
#> 184 0.0025 0 1 1 0
#> 185 0.0025 0 1 1 0
#> 186 0.0025 0 1 1 0
#> 187 0.0025 0 1 1 0
#> 188 0.0025 0 1 1 0
#> 189 0.0025 0 1 1 0
#> 190 0.0025 0 1 1 0
#>
#> $species
#> species presence entropy robustness sensitivity
#> 1 spc_01 0.5 1 9 9
#> 2 spc_02 0.5 1 9 9
#> 3 spc_03 0.5 1 9 9
#> 4 spc_04 0.5 1 9 9
#> 5 spc_05 0.5 1 9 9
#> 6 spc_06 0.5 1 9 9
#> 7 spc_07 0.5 1 9 9
#> 8 spc_08 0.5 1 9 9
#> 9 spc_09 0.5 1 9 9
#> 10 spc_10 0.5 1 9 9
#> 11 spc_11 0.5 1 9 9
#> 12 spc_12 0.5 1 9 9
#> 13 spc_13 0.5 1 9 9
#> 14 spc_14 0.5 1 9 9
#> 15 spc_15 0.5 1 9 9
#> 16 spc_16 0.5 1 9 9
#> 17 spc_17 0.5 1 9 9
#> 18 spc_18 0.5 1 9 9
#> 19 spc_19 0.5 1 9 9
#> 20 spc_20 0.5 1 9 9
#>
#> $global
#> c_score c_score_S2
#> 1 52.63158 5263.158
#>